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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO
Britta Velten, Jana M. Braunger, Ricard Argelaguet, et al.
Nature Methods (2022) Vol. 19, Iss. 2, pp. 179-186
Open Access | Times Cited: 110

Showing 26-50 of 110 citing articles:

A review on deep learning applications in highly multiplexed tissue imaging data analysis
Mohammed Zidane, Ahmad Makky, Matthias Bruhns, et al.
Frontiers in Bioinformatics (2023) Vol. 3
Open Access | Times Cited: 14
Spatiotemporal multi-omics: exploring molecular landscapes in aging and regenerative medicine
Liuxi Chu, Wenjia Wang, Xin-Pei Gu, et al.
Military Medical Research (2024) Vol. 11, Iss. 1
Open Access | Times Cited: 5
Mapping the Multiscale Proteomic Organization of Cellular and Disease Phenotypes
Anthony J. Cesnik, Leah V. Schaffer, Ishan Gaur, et al.
Annual Review of Biomedical Data Science (2024) Vol. 7, Iss. 1, pp. 369-389
Open Access | Times Cited: 4
Defining precancer: a grand challenge for the cancer community
Jessica M. Faupel‐Badger, Indu Kohaar, Manisha Bahl, et al.
Nature reviews. Cancer (2024)
Closed Access | Times Cited: 4
From Omics to Multi-Omics: A Review of Advantages and Tradeoffs
C. Nelson Hayes, Hikaru Nakahara, Atsushi Ono, et al.
Genes (2024) Vol. 15, Iss. 12, pp. 1551-1551
Open Access | Times Cited: 4
Learning single-cell spatial context through integrated spatial multiomics with CORAL
Siyu He, Matthew F Bieniosek, Dongyuan Song, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
Multimodal Insights into Adult Neurogenesis: An Integrative Review of Multi-Omics Approaches
Jin Li, Leyi Huang, Wenjie Xiao, et al.
Heliyon (2025) Vol. 11, Iss. 4, pp. e42668-e42668
Open Access
SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data
Mingze Dong, David Su, Harriet M. Kluger, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
Robust deepfake detection using multi-scale feature fusion
G. Yogarajan, S. Soundhariya, R. Harini
Multimedia Tools and Applications (2025)
Closed Access
CellPie: a scalable spatial transcriptomics factor discovery method via joint non-negative matrix factorization
Sokratia Georgaka, William Geraint Morgans, Qian Zhao, et al.
Nucleic Acids Research (2025) Vol. 53, Iss. 6
Open Access
LEOPARD: missing view completion for multi-timepoint omics data via representation disentanglement and temporal knowledge transfer
Siyu Han, Shixiang Yu, Mengya Shi, et al.
Nature Communications (2025) Vol. 16, Iss. 1
Open Access
MIDAA: deep archetypal analysis for interpretable multi-omic data integration based on biological principles
Salvatore Milite, Giulio Caravagna, Andrea Sottoriva
Genome biology (2025) Vol. 26, Iss. 1
Open Access
Algorithms and tools for data-driven omics integration to achieve multilayer biological insights: a narrative review
Aurelia Morabito, Giulia De Simone, Roberta Pastorelli, et al.
Journal of Translational Medicine (2025) Vol. 23, Iss. 1
Open Access
Systems Immunology Approaches to Metabolism
Denis A. Mogilenko, Alexey Sergushichev, Maxim N. Artyomov
Annual Review of Immunology (2023) Vol. 41, Iss. 1, pp. 317-342
Open Access | Times Cited: 10
Modeling causal signal propagation in multi-omic factor space with COSMOS
Aurélien Dugourd, Pascal Lafrenz, Diego Mañanes, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Closed Access | Times Cited: 3
Systems analysis shows a role of cytophilic antibodies in shaping innate tolerance to malaria
Maximilian Julius Lautenbach, Victor Yman, Carolina Sousa Silva, et al.
Cell Reports (2022) Vol. 39, Iss. 3, pp. 110709-110709
Open Access | Times Cited: 14
A Detailed Catalogue of Multi-Omics Methodologies for Identification of Putative Biomarkers and Causal Molecular Networks in Translational Cancer Research
Efstathios‐Iason Vlachavas, Jonas Bohn, Frank Ückert, et al.
International Journal of Molecular Sciences (2021) Vol. 22, Iss. 6, pp. 2822-2822
Open Access | Times Cited: 18
Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics
Cong Ma, Uthsav Chitra, Shirley Zhang, et al.
Cell Systems (2022) Vol. 13, Iss. 10, pp. 786-797.e13
Open Access | Times Cited: 13
Increasing resolution in stress neurobiology: from single cells to complex group behaviors
Lucas Miranda, Joeri Bordes, Serena Gasperoni, et al.
Stress (2023) Vol. 26, Iss. 1
Open Access | Times Cited: 7
Far beyond anti-angiogenesis: Benefits for anti-basicFGF therapy in cancer
Chunyan Li, KeLi Kuang, Junrong Du, et al.
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research (2022) Vol. 1869, Iss. 7, pp. 119253-119253
Open Access | Times Cited: 11
Mature neutrophils and a NF-κB-to-IFN transition determine the unifying disease recovery dynamics in COVID-19
Amit Frishberg, Emma J. Kooistra, Melanie Nuesch-Germano, et al.
Cell Reports Medicine (2022) Vol. 3, Iss. 6, pp. 100652-100652
Open Access | Times Cited: 11
Deep Archetypal Analysis for interpretable multi-omic data integration based on biological principles
Salvatore Milite, Giulio Caravagna, Andrea Sottoriva
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 2
Longitudinal single-cell data informs deterministic modelling of inflammatory bowel disease
Christoph Kilian, Hanna Ulrich, Viktor A. Zouboulis, et al.
npj Systems Biology and Applications (2024) Vol. 10, Iss. 1
Open Access | Times Cited: 2
Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics
Axel A. Almet, Yuan‐Chen Tsai, Momoko Watanabe, et al.
Nature Methods (2024) Vol. 21, Iss. 10, pp. 1806-1817
Open Access | Times Cited: 2
Answering open questions in biology using spatial genomics and structured methods
Siddhartha G. Jena, Archit Verma, Barbara E. Engelhardt
BMC Bioinformatics (2024) Vol. 25, Iss. 1
Open Access | Times Cited: 2

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