Open Access Helper

OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Macromolecular modeling and design in Rosetta: recent methods and frameworks
Julia Koehler Leman, Brian D. Weitzner, Steven M. Lewis, et al.
Nature Methods (2020) Vol. 17, Iss. 7, pp. 665-680
Open Access | Times Cited: 675

Showing 26-50 of 675 citing articles:

Opportunities and Challenges for Machine Learning-Assisted Enzyme Engineering
Jason Yang, Francesca-Zhoufan Li, Frances H. Arnold
ACS Central Science (2024) Vol. 10, Iss. 2, pp. 226-241
Open Access | Times Cited: 51
De novo design of modular peptide-binding proteins by superhelical matching
Kejia Wu, Hua Bai, Ya‐Ting Chang, et al.
Nature (2023) Vol. 616, Iss. 7957, pp. 581-589
Open Access | Times Cited: 43
Sequence-structure-function relationships in the microbial protein universe
Julia Koehler Leman, Paweł Szczerbiak, P. Douglas Renfrew, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 43
Advancing Strategies for Proteolysis-Targeting Chimera Design
Minglei Li, Ying Zhi, Bo Liu, et al.
Journal of Medicinal Chemistry (2023) Vol. 66, Iss. 4, pp. 2308-2329
Closed Access | Times Cited: 42
Evaluation of AlphaFold antibody–antigen modeling with implications for improving predictive accuracy
Rui Yin, Brian G. Pierce
Protein Science (2023) Vol. 33, Iss. 1
Open Access | Times Cited: 41
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning
Rui Yin, Helder Veras Ribeiro Filho, Valerie C. L. Lin, et al.
Nucleic Acids Research (2023) Vol. 51, Iss. W1, pp. W569-W576
Open Access | Times Cited: 40
A new age in protein design empowered by deep learning
Hamed Khakzad, Ilia Igashov, Arne Schneuing, et al.
Cell Systems (2023) Vol. 14, Iss. 11, pp. 925-939
Open Access | Times Cited: 40
Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models
Yuchi Qiu, Guo‐Wei Wei
Briefings in Bioinformatics (2023) Vol. 24, Iss. 5
Open Access | Times Cited: 38
SARS-CoV-2 uses CD4 to infect T helper lymphocytes
Natália S. Brunetti, Gustavo Gastão Davanzo, Diogo de Moraes, et al.
eLife (2023) Vol. 12
Open Access | Times Cited: 38
Persistent spectral theory-guided protein engineering
Yuchi Qiu, Guo‐Wei Wei
Nature Computational Science (2023) Vol. 3, Iss. 2, pp. 149-163
Open Access | Times Cited: 36
DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
Wei Lu, Jixian Zhang, Weifeng Huang, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 36
Sparks of function by de novo protein design
Alexander E. Chu, Tianyu Lu, Po‐Ssu Huang
Nature Biotechnology (2024) Vol. 42, Iss. 2, pp. 203-215
Closed Access | Times Cited: 27
Continuous evolution of compact protein degradation tags regulated by selective molecular glues
Jaron A. M. Mercer, Stephan J. DeCarlo, Shourya S. Roy Burman, et al.
Science (2024) Vol. 383, Iss. 6688
Open Access | Times Cited: 17
Growing Glycans in Rosetta: Accurate de novo glycan modeling, density fitting, and rational sequon design
Jared Adolf‐Bryfogle, Jason W. Labonte, John C. Kraft, et al.
PLoS Computational Biology (2024) Vol. 20, Iss. 6, pp. e1011895-e1011895
Open Access | Times Cited: 16
Programmable synthetic receptors: the next-generation of cell and gene therapies
Fei Teng, Tongtong Cui, Li Zhou, et al.
Signal Transduction and Targeted Therapy (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 14
Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies
Natasha I. Edman, Ashish Phal, Rachel L. Redler, et al.
Cell (2024) Vol. 187, Iss. 14, pp. 3726-3740.e43
Open Access | Times Cited: 13
Vaccination induces broadly neutralizing antibody precursors to HIV gp41
Torben Schiffner, Ivy Phung, Rashmi Ray, et al.
Nature Immunology (2024) Vol. 25, Iss. 6, pp. 1073-1082
Open Access | Times Cited: 12
Computational design of soluble and functional membrane protein analogues
Casper A. Goverde, Martin Pačesa, Nicolas Goldbach, et al.
Nature (2024) Vol. 631, Iss. 8020, pp. 449-458
Open Access | Times Cited: 12
Looking Back: A Short History of the Discovery of Enzymes and How They Became Powerful Chemical Tools
Christian M. Heckmann, Francesca Paradisi
ChemCatChem (2020) Vol. 12, Iss. 24, pp. 6082-6102
Open Access | Times Cited: 92
An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants
Johnathan D. Guest, Thom Vreven, Jing Zhou, et al.
Structure (2021) Vol. 29, Iss. 6, pp. 606-621.e5
Open Access | Times Cited: 92
The CD28-Transmembrane Domain Mediates Chimeric Antigen Receptor Heterodimerization With CD28
Yannick D. Müller, Duy Nguyen, Leonardo M. R. Ferreira, et al.
Frontiers in Immunology (2021) Vol. 12
Open Access | Times Cited: 89
Extended connectivity interaction features: improving binding affinity prediction through chemical description
Norberto Sánchez‐Cruz, José L. Medina‐Franco, Jordi Mestres, et al.
Bioinformatics (2020) Vol. 37, Iss. 10, pp. 1376-1382
Closed Access | Times Cited: 84
De novo metalloprotein design
Matthew J. Chalkley, Samuel I. Mann, William F. DeGrado
Nature Reviews Chemistry (2021) Vol. 6, Iss. 1, pp. 31-50
Open Access | Times Cited: 79
An enumerative algorithm for de novo design of proteins with diverse pocket structures
Benjamin Basanta, Matthew J. Bick, Asim K. Bera, et al.
Proceedings of the National Academy of Sciences (2020) Vol. 117, Iss. 36, pp. 22135-22145
Open Access | Times Cited: 73
Leveraging crosslinking mass spectrometry in structural and cell biology
Andrea Graziadei, Juri Rappsilber
Structure (2021) Vol. 30, Iss. 1, pp. 37-54
Open Access | Times Cited: 72

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