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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

A Python library for probabilistic analysis of single-cell omics data
Adam Gayoso, Romain Lopez, Galen Xing, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 2, pp. 163-166
Open Access | Times Cited: 425

Showing 26-50 of 425 citing articles:

Deep generative modeling of transcriptional dynamics for RNA velocity analysis in single cells
Adam Gayoso, Philipp Weiler, Mohammad Lotfollahi, et al.
Nature Methods (2023) Vol. 21, Iss. 1, pp. 50-59
Open Access | Times Cited: 50
A fast, scalable and versatile tool for analysis of single-cell omics data
Kai Zhang, Nathan R. Zemke, Ethan J. Armand, et al.
Nature Methods (2024) Vol. 21, Iss. 2, pp. 217-227
Open Access | Times Cited: 45
Immune cell dynamics deconvoluted by single-cell RNA sequencing in normothermic machine perfusion of the liver
Theresa Hautz, Stefan Salcher, Margot Fodor, et al.
Nature Communications (2023) Vol. 14, Iss. 1
Open Access | Times Cited: 43
Harmonized cross-species cell atlases of trigeminal and dorsal root ganglia
Shamsuddin A. Bhuiyan, Mengyi Xu, Lite Yang, et al.
Science Advances (2024) Vol. 10, Iss. 25
Open Access | Times Cited: 43
Blockade of LAG-3 and PD-1 leads to co-expression of cytotoxic and exhaustion gene modules in CD8+ T cells to promote antitumor immunity
Anthony R. Cillo, Carly Cardello, Feng Shan, et al.
Cell (2024) Vol. 187, Iss. 16, pp. 4373-4388.e15
Closed Access | Times Cited: 41
Human skeletal muscle aging atlas
Veronika R. Kedlian, Yaning Wang, Tianliang Liu, et al.
Nature Aging (2024) Vol. 4, Iss. 5, pp. 727-744
Open Access | Times Cited: 40
Open-ST: High-resolution spatial transcriptomics in 3D
Marie Schott, Daniel León-Periñán, Elena Splendiani, et al.
Cell (2024) Vol. 187, Iss. 15, pp. 3953-3972.e26
Open Access | Times Cited: 37
A single-cell atlas enables mapping of homeostatic cellular shifts in the adult human breast
Austin D. Reed, Sara Pensa, Adi Steif, et al.
Nature Genetics (2024) Vol. 56, Iss. 4, pp. 652-662
Open Access | Times Cited: 32
Reciprocal activity of AgRP and POMC neurons governs coordinated control of feeding and metabolism
Alain J. De Solís, Almudena Del Río-Martín, Jan Radermacher, et al.
Nature Metabolism (2024) Vol. 6, Iss. 3, pp. 473-493
Open Access | Times Cited: 29
An immune cell map of human lung adenocarcinoma development reveals an anti-tumoral role of the Tfh-dependent tertiary lymphoid structure
Wei Liu, Wenhua You, Zhenwei Lan, et al.
Cell Reports Medicine (2024) Vol. 5, Iss. 3, pp. 101448-101448
Open Access | Times Cited: 26
Immune microniches shape intestinal Treg function
Yisu Gu, Raquel Bartolomé-Casado, Chuan Xu, et al.
Nature (2024) Vol. 628, Iss. 8009, pp. 854-862
Open Access | Times Cited: 22
An integrated transcriptomic cell atlas of human neural organoids
Zhisong He, Leander Dony, Jonas Simon Fleck, et al.
Nature (2024) Vol. 635, Iss. 8039, pp. 690-698
Open Access | Times Cited: 21
Pan-cancer profiling of tumor-infiltrating natural killer cells through transcriptional reference mapping
Herman Netskar, Aline Pfefferle, Jodie P. Goodridge, et al.
Nature Immunology (2024) Vol. 25, Iss. 8, pp. 1445-1459
Open Access | Times Cited: 20
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs
Siyu He, Yinuo Jin, Achille Nazaret, et al.
Nature Biotechnology (2024)
Open Access | Times Cited: 19
CD200+ fibroblasts form a pro-resolving mesenchymal network in arthritis
Simon Rauber, Hashem Mohammadian, Christian Schmidkonz, et al.
Nature Immunology (2024) Vol. 25, Iss. 4, pp. 682-692
Open Access | Times Cited: 17
Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data
Maria Carilli, Gennady Gorin, Yongin Choi, et al.
Nature Methods (2024) Vol. 21, Iss. 8, pp. 1466-1469
Closed Access | Times Cited: 16
Integrating single-cell RNA and T cell/B cell receptor sequencing with mass cytometry reveals dynamic trajectories of human peripheral immune cells from birth to old age
Yufei Wang, Ronghong Li, Renyang Tong, et al.
Nature Immunology (2025)
Open Access | Times Cited: 5
A comprehensive spatio-cellular map of the human hypothalamus
John A. Tadross, Lukas Steuernagel, Georgina K.C. Dowsett, et al.
Nature (2025) Vol. 639, Iss. 8055, pp. 708-716
Open Access | Times Cited: 5
Mapping cells through time and space with moscot
Dominik Klein, Giovanni Palla, Marius Lange, et al.
Nature (2025)
Open Access | Times Cited: 3
Inhibition of IFITM3 in cerebrovascular endothelium alleviates Alzheimer's‐related phenotypes
Yijia Feng, Shengya Wang, Danlu Yang, et al.
Alzheimer s & Dementia (2025)
Open Access | Times Cited: 2
RORγt-expressing dendritic cells are functionally versatile and evolutionarily conserved antigen-presenting cells
Hamsa Narasimhan, Maria Lucia Richter, Ramin Shakiba, et al.
Proceedings of the National Academy of Sciences (2025) Vol. 122, Iss. 9
Open Access | Times Cited: 2
The polyamine-regulating enzyme SSAT1 impairs tissue regulatory T cell function in chronic cutaneous inflammation
Teresa Neuwirth, Daniel Malzl, Katja Knapp, et al.
Immunity (2025)
Open Access | Times Cited: 2
Single-cell transcriptomics for the assessment of cardiac disease
Antonio M. A. Miranda, Vaibhao Janbandhu, Henrike Maatz, et al.
Nature Reviews Cardiology (2022) Vol. 20, Iss. 5, pp. 289-308
Open Access | Times Cited: 62
PeakVI: A deep generative model for single-cell chromatin accessibility analysis
Tal Ashuach, Daniel A. Reidenbach, Adam Gayoso, et al.
Cell Reports Methods (2022) Vol. 2, Iss. 3, pp. 100182-100182
Open Access | Times Cited: 61
Metacell-2: a divide-and-conquer metacell algorithm for scalable scRNA-seq analysis
Oren Ben-Kiki, Akhiad Bercovich, Aviezer Lifshitz, et al.
Genome biology (2022) Vol. 23, Iss. 1
Open Access | Times Cited: 53

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