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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Using deep learning to annotate the protein universe
Maxwell L. Bileschi, David Belanger, Drew Bryant, et al.
Nature Biotechnology (2022) Vol. 40, Iss. 6, pp. 932-937
Open Access | Times Cited: 211

Showing 26-50 of 211 citing articles:

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology
Wei Liu, Ziye Wang, Ronghui You, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 17
Differentiable biology: using deep learning for biophysics-based and data-driven modeling of molecular mechanisms
Mohammed AlQuraishi, Peter K. Sorger
Nature Methods (2021) Vol. 18, Iss. 10, pp. 1169-1180
Open Access | Times Cited: 69
Convolutions are competitive with transformers for protein sequence pretraining
Kevin Yang, Nicolò Fusi, Alex X. Lu
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 54
GotEnzymes: an extensive database of enzyme parameter predictions
Feiran Li, Yu Chen, Mihail Anton, et al.
Nucleic Acids Research (2022) Vol. 51, Iss. D1, pp. D583-D586
Open Access | Times Cited: 39
Generative power of a protein language model trained on multiple sequence alignments
Damiano Sgarbossa, Umberto Lupo, Anne‐Florence Bitbol
eLife (2023) Vol. 12
Open Access | Times Cited: 30
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models
Vamsi Nallapareddy, Nicola Bordin, Ian Sillitoe, et al.
Bioinformatics (2023) Vol. 39, Iss. 1
Open Access | Times Cited: 26
The 2023 Nucleic Acids Research Database Issue and the online molecular biology database collection
Daniel J. Rigden, Xosé M. Fernández
Nucleic Acids Research (2023) Vol. 51, Iss. D1, pp. D1-D8
Open Access | Times Cited: 22
Theoretical and Data-Driven Approaches for Biomolecular Condensates
Kadi L. Saar, Daoyuan Qian, Lydia L. Good, et al.
Chemical Reviews (2023) Vol. 123, Iss. 14, pp. 8988-9009
Open Access | Times Cited: 22
The Landscape and Perspectives of the Human Gut Metaproteomics
Zhong-Zhi Sun, Zhibin Ning, Daniel Figeys
Molecular & Cellular Proteomics (2024) Vol. 23, Iss. 5, pp. 100763-100763
Open Access | Times Cited: 9
Leveraging Artificial Intelligence to Expedite Antibody Design and Enhance Antibody–Antigen Interactions
Doo Nam Kim, Andrew McNaughton, Neeraj Kumar
Bioengineering (2024) Vol. 11, Iss. 2, pp. 185-185
Open Access | Times Cited: 7
Review of AlphaFold 3: Transformative Advances in Drug Design and Therapeutics
Dev Desai, Shiv V Kantliwala, Jyothi Vybhavi, et al.
Cureus (2024)
Open Access | Times Cited: 7
DeepSS2GO: protein function prediction from secondary structure
Fu Song, Jiaqi Su, Sixing Huang, et al.
Briefings in Bioinformatics (2024) Vol. 25, Iss. 3
Open Access | Times Cited: 6
ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
Jin Su, Xibin Zhou, Xuting Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2024)
Open Access | Times Cited: 6
InterPro: the protein sequence classification resource in 2025
Matthias Blum, Antonina Andreeva, Laise Cavalcanti Florentino, et al.
Nucleic Acids Research (2024) Vol. 53, Iss. D1, pp. D444-D456
Open Access | Times Cited: 6
Decoding the Molecular Language of Proteins with Evola
Xibin Zhou, Chenchen Han, Yingqi Zhang, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2025)
Open Access
ProtSpace: a tool for visualizing protein space
Tobias Senoner, Tobias Olenyi, Michael Heinzinger, et al.
Journal of Molecular Biology (2025), pp. 168940-168940
Open Access
Functional profiling of the sequence stockpile: a protein pair-based assessment of in silico prediction tools
R. Prabakaran, Yana Bromberg
Bioinformatics (2025)
Open Access
Responsible AI in biotechnology: balancing discovery, innovation and biosecurity risks
Nicole E. Wheeler
Frontiers in Bioengineering and Biotechnology (2025) Vol. 13
Open Access
Are protein language models the new universal key?
Konstantin Weißenow, Burkhard Rost
Current Opinion in Structural Biology (2025) Vol. 91, pp. 102997-102997
Open Access
TMVisDB: Annotation and 3D-visualization of transmembrane proteins
Tobias Olenyi, Céline Marquet, Anastasiia Grekova, et al.
Journal of Molecular Biology (2025), pp. 168997-168997
Open Access
FuncPEP: A Database of Functional Peptides Encoded by Non-Coding RNAs
Mihnea P. Dragomir, Ganiraju C. Manyam, Leonie Ott, et al.
Non-Coding RNA (2020) Vol. 6, Iss. 4, pp. 41-41
Open Access | Times Cited: 66
DSResSol: A Sequence-Based Solubility Predictor Created with Dilated Squeeze Excitation Residual Networks
Mohammad Madani, Kaixiang Lin, Anna Tarakanova
International Journal of Molecular Sciences (2021) Vol. 22, Iss. 24, pp. 13555-13555
Open Access | Times Cited: 47
A roadmap for the functional annotation of protein families: a community perspective
Valérie de Crécy‐Lagard, Rocío Amorín, Cecilia Arighi, et al.
Database (2022) Vol. 2022
Open Access | Times Cited: 29
Efficient evolution of human antibodies from general protein language models and sequence information alone
Brian Hie, Duo Xu, Varun R. Shanker, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 26
Ultra-fast protein structure prediction to capture effects of sequence variation in mutation movies
Konstantin Weißenow, Michael Heinzinger, Martin Steinegger, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2022)
Open Access | Times Cited: 26

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