OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!
If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.
Requested Article:
Design of synthetic human gut microbiome assembly and butyrate production
Ryan L. Clark, Bryce Connors, David Stevenson, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 135
Ryan L. Clark, Bryce Connors, David Stevenson, et al.
Nature Communications (2021) Vol. 12, Iss. 1
Open Access | Times Cited: 135
Showing 26-50 of 135 citing articles:
The gut microbiome in systemic lupus erythematosus: lessons from rheumatic fever
Gregg J. Silverman, Doua F. Azzouz, Nicolas Gisch, et al.
Nature Reviews Rheumatology (2024) Vol. 20, Iss. 3, pp. 143-157
Closed Access | Times Cited: 6
Gregg J. Silverman, Doua F. Azzouz, Nicolas Gisch, et al.
Nature Reviews Rheumatology (2024) Vol. 20, Iss. 3, pp. 143-157
Closed Access | Times Cited: 6
Effects of data transformation and model selection on feature importance in microbiome classification data
Zuzanna Karwowska, Oliver Aasmets, Tomasz Kościółek, et al.
Microbiome (2025) Vol. 13, Iss. 1
Open Access
Zuzanna Karwowska, Oliver Aasmets, Tomasz Kościółek, et al.
Microbiome (2025) Vol. 13, Iss. 1
Open Access
A decade of advances in human gut microbiome-derived biotherapeutics
Alena L. Pribyl, Philip Hugenholtz, Matthew A. Cooper
Nature Microbiology (2025)
Closed Access
Alena L. Pribyl, Philip Hugenholtz, Matthew A. Cooper
Nature Microbiology (2025)
Closed Access
The architecture of theory and data in microbiome design: towards an S-matrix for microbiomes
Shreya Arya, Ashish B. George, James P. O’Dwyer
Current Opinion in Microbiology (2025) Vol. 83, pp. 102580-102580
Closed Access
Shreya Arya, Ashish B. George, James P. O’Dwyer
Current Opinion in Microbiology (2025) Vol. 83, pp. 102580-102580
Closed Access
Negative interactions determine Clostridioides difficile growth in synthetic human gut communities
Susan Hromada, Yili Qian, Tyler B. Jacobson, et al.
Molecular Systems Biology (2021) Vol. 17, Iss. 10
Open Access | Times Cited: 39
Susan Hromada, Yili Qian, Tyler B. Jacobson, et al.
Molecular Systems Biology (2021) Vol. 17, Iss. 10
Open Access | Times Cited: 39
Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics
Mayank Baranwal, Ryan L. Clark, Jaron Thompson, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 32
Mayank Baranwal, Ryan L. Clark, Jaron Thompson, et al.
eLife (2022) Vol. 11
Open Access | Times Cited: 32
Toward merging bottom–up and top–down model-based designing of synthetic microbial communities
David San León, Juan Nogales
Current Opinion in Microbiology (2022) Vol. 69, pp. 102169-102169
Closed Access | Times Cited: 32
David San León, Juan Nogales
Current Opinion in Microbiology (2022) Vol. 69, pp. 102169-102169
Closed Access | Times Cited: 32
Butyrate Properties in Immune-Related Diseases: Friend or Foe?
Muhammad Anshory, Raden Mohamad Rendy Ariezal Effendi, Handono Kalim, et al.
Fermentation (2023) Vol. 9, Iss. 3, pp. 205-205
Open Access | Times Cited: 18
Muhammad Anshory, Raden Mohamad Rendy Ariezal Effendi, Handono Kalim, et al.
Fermentation (2023) Vol. 9, Iss. 3, pp. 205-205
Open Access | Times Cited: 18
Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions
Jaron Thompson, Víctor M. Zavala, Ophelia S. Venturelli
PLoS Computational Biology (2023) Vol. 19, Iss. 9, pp. e1011436-e1011436
Open Access | Times Cited: 17
Jaron Thompson, Víctor M. Zavala, Ophelia S. Venturelli
PLoS Computational Biology (2023) Vol. 19, Iss. 9, pp. e1011436-e1011436
Open Access | Times Cited: 17
In Vitro Human Gastrointestinal Tract Simulation Systems: A Panoramic Review
Yogini Dixit, Khushboo Kanojiya, Namrata Bhingardeve, et al.
Probiotics and Antimicrobial Proteins (2023) Vol. 16, Iss. 2, pp. 501-518
Closed Access | Times Cited: 15
Yogini Dixit, Khushboo Kanojiya, Namrata Bhingardeve, et al.
Probiotics and Antimicrobial Proteins (2023) Vol. 16, Iss. 2, pp. 501-518
Closed Access | Times Cited: 15
Life at the borderlands: microbiomes of interfaces critical to One Health
Simon R. Law, Falko Mathes, Amy M. Paten, et al.
FEMS Microbiology Reviews (2024) Vol. 48, Iss. 2
Open Access | Times Cited: 5
Simon R. Law, Falko Mathes, Amy M. Paten, et al.
FEMS Microbiology Reviews (2024) Vol. 48, Iss. 2
Open Access | Times Cited: 5
Biobased short chain fatty acid production - Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches
Merve Atasoy, William T. Scott, Alberte Regueira, et al.
Biotechnology Advances (2024) Vol. 73, pp. 108363-108363
Open Access | Times Cited: 5
Merve Atasoy, William T. Scott, Alberte Regueira, et al.
Biotechnology Advances (2024) Vol. 73, pp. 108363-108363
Open Access | Times Cited: 5
Roseburia intestinalis‐derived extracellular vesicles ameliorate colitis by modulating intestinal barrier, microbiome, and inflammatory responses
Hwa Seung Han, Soonjae Hwang, Seung Young Choi, et al.
Journal of Extracellular Vesicles (2024) Vol. 13, Iss. 8
Open Access | Times Cited: 5
Hwa Seung Han, Soonjae Hwang, Seung Young Choi, et al.
Journal of Extracellular Vesicles (2024) Vol. 13, Iss. 8
Open Access | Times Cited: 5
A synbiotic of Anaerostipes caccae and lactulose prevents and treats food allergy in mice
Lauren A. Hesser, Armando Andres Puente, Jack Arnold, et al.
Cell Host & Microbe (2024) Vol. 32, Iss. 7, pp. 1163-1176.e6
Closed Access | Times Cited: 4
Lauren A. Hesser, Armando Andres Puente, Jack Arnold, et al.
Cell Host & Microbe (2024) Vol. 32, Iss. 7, pp. 1163-1176.e6
Closed Access | Times Cited: 4
Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
Jordy Evan Sulaiman, Jaron Thompson, Yili Qian, et al.
Nature Communications (2024) Vol. 15, Iss. 1
Open Access | Times Cited: 4
A systematic framework for understanding the microbiome in human health and disease: from basic principles to clinical translation
Ziqi Ma, Tao Zuo, Norbert Frey, et al.
Signal Transduction and Targeted Therapy (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 4
Ziqi Ma, Tao Zuo, Norbert Frey, et al.
Signal Transduction and Targeted Therapy (2024) Vol. 9, Iss. 1
Open Access | Times Cited: 4
Towards a deeper understanding of microbial communities: integrating experimental data with dynamic models
Yili Qian, Freeman Lan, Ophelia S. Venturelli
Current Opinion in Microbiology (2021) Vol. 62, pp. 84-92
Open Access | Times Cited: 38
Yili Qian, Freeman Lan, Ophelia S. Venturelli
Current Opinion in Microbiology (2021) Vol. 62, pp. 84-92
Open Access | Times Cited: 38
Gut Microbiota in Nutrition and Health with a Special Focus on Specific Bacterial Clusters
Lucas R. F. Bresser, Marcus C. de Goffau, Evgeni Levin, et al.
Cells (2022) Vol. 11, Iss. 19, pp. 3091-3091
Open Access | Times Cited: 22
Lucas R. F. Bresser, Marcus C. de Goffau, Evgeni Levin, et al.
Cells (2022) Vol. 11, Iss. 19, pp. 3091-3091
Open Access | Times Cited: 22
Globally, tree fecundity exceeds productivity gradients
Valentin Journé, Robert A. Andrus, Marie‐Claire Aravena Acuña, et al.
Ecology Letters (2022) Vol. 25, Iss. 6, pp. 1471-1482
Open Access | Times Cited: 21
Valentin Journé, Robert A. Andrus, Marie‐Claire Aravena Acuña, et al.
Ecology Letters (2022) Vol. 25, Iss. 6, pp. 1471-1482
Open Access | Times Cited: 21
Peeling off the layers from microbial dark matter (MDM): recent advances, future challenges, and opportunities
Sajid Iqbal, Farida Begum, Ihsan Ullah, et al.
Critical Reviews in Microbiology (2024), pp. 1-21
Open Access | Times Cited: 3
Sajid Iqbal, Farida Begum, Ihsan Ullah, et al.
Critical Reviews in Microbiology (2024), pp. 1-21
Open Access | Times Cited: 3
Engineering Gut Symbionts: A Way to Promote Bee Growth?
Pachara Sattayawat, Sahutchai Inwongwan, Nuttapol Noirungsee, et al.
Insects (2024) Vol. 15, Iss. 5, pp. 369-369
Open Access | Times Cited: 3
Pachara Sattayawat, Sahutchai Inwongwan, Nuttapol Noirungsee, et al.
Insects (2024) Vol. 15, Iss. 5, pp. 369-369
Open Access | Times Cited: 3
Modeling approaches for probing cross-feeding interactions in the human gut microbiome
Pedro A. Saa, Arlés Urrutia, Claudia Silva, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 20, pp. 79-89
Open Access | Times Cited: 27
Pedro A. Saa, Arlés Urrutia, Claudia Silva, et al.
Computational and Structural Biotechnology Journal (2021) Vol. 20, pp. 79-89
Open Access | Times Cited: 27
Metabolic Modeling and Bidirectional Culturing of Two Gut Microbes Reveal Cross-Feeding Interactions and Protective Effects on Intestinal Cells
Belén Hirmas, Naschla Gasaly, Guillermo Orellana, et al.
mSystems (2022) Vol. 7, Iss. 5
Open Access | Times Cited: 18
Belén Hirmas, Naschla Gasaly, Guillermo Orellana, et al.
mSystems (2022) Vol. 7, Iss. 5
Open Access | Times Cited: 18
Ecological landscapes guide the assembly of optimal microbial communities
Ashish B. George, Kirill S. Korolev
PLoS Computational Biology (2023) Vol. 19, Iss. 1, pp. e1010570-e1010570
Open Access | Times Cited: 10
Ashish B. George, Kirill S. Korolev
PLoS Computational Biology (2023) Vol. 19, Iss. 1, pp. e1010570-e1010570
Open Access | Times Cited: 10
Electrogenetic signaling and information propagation for controlling microbial consortia via programmed lysis
Eric VanArsdale, Ali Navid, Monica J. Chu, et al.
Biotechnology and Bioengineering (2023) Vol. 120, Iss. 5, pp. 1366-1381
Open Access | Times Cited: 10
Eric VanArsdale, Ali Navid, Monica J. Chu, et al.
Biotechnology and Bioengineering (2023) Vol. 120, Iss. 5, pp. 1366-1381
Open Access | Times Cited: 10