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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Accelerating COVID-19 Research Using Molecular Dynamics Simulation
Aditya K. Padhi, Soumya Lipsa Rath, Timir Tripathi
The Journal of Physical Chemistry B (2021) Vol. 125, Iss. 32, pp. 9078-9091
Closed Access | Times Cited: 64

Showing 26-50 of 64 citing articles:

Review of Electrostatic Force Calculation Methods and Their Acceleration in Molecular Dynamics Packages Using Graphics Processors
Anu George, Sandip Mondal, Madhura Purnaprajna, et al.
ACS Omega (2022) Vol. 7, Iss. 37, pp. 32877-32896
Open Access | Times Cited: 10
Different Binding Modes of SARS-CoV-1 and SARS-CoV-2 Fusion Peptides to Cell Membranes: The Influence of Peptide Helix Length
Hujun Shen, Zhenhua Wu, Ling Chen
The Journal of Physical Chemistry B (2022) Vol. 126, Iss. 23, pp. 4261-4271
Closed Access | Times Cited: 9
Exploring the binding dynamics of covalent inhibitors within active site of PLpro in SARS-CoV-2
Deepesh Kumar Patel, Harish Kumar, M. Elizabeth Sobhia
Computational Biology and Chemistry (2024) Vol. 112, pp. 108132-108132
Closed Access | Times Cited: 1
Mechanistic Insights into the Mutational Landscape of the Main Protease/3CLPro and Its Impact on Long-Term COVID-19/SARS-CoV-2 Management
Aganze Gloire-Aimé Mushebenge, Samuel Chima Ugbaja, Nonjabulo Ntombikhona Magwaza, et al.
(2024)
Open Access | Times Cited: 1
Integrated All-Atom and Coarse-Grained Simulations Uncover Structural, Dynamics and Energetic Shifts in SARS-CoV-2 JN.1 and BA.2.86 Variants
Amreeta Sharma, Shweata Maurya, Timir Tripathi, et al.
Acta Tropica (2024) Vol. 260, pp. 107444-107444
Closed Access | Times Cited: 1
SARS-CoV-2 Delta Variant: Interplay between Individual Mutations and Their Allosteric Synergy
Chun Chan, Yi Song, Z. Xu, et al.
Biomolecules (2022) Vol. 12, Iss. 12, pp. 1742-1742
Open Access | Times Cited: 8
Clinical Applications of Protein-Based Therapeutics
Manoj Kumar Yadav, Ankita Sahu, Anu ., et al.
(2023), pp. 23-47
Closed Access | Times Cited: 4
Integration of spectroscopic and computational data to analyze protein structure, function, folding, and dynamics
Kavya Prince, Santanu Sasidharan, Niharika Nag, et al.
Elsevier eBooks (2022), pp. 483-502
Closed Access | Times Cited: 7
Effect of Disulfide Bridge on the Binding of SARS-CoV-2 Fusion Peptide to Cell Membrane: A Coarse-Grained Study
Hujun Shen, Zhenhua Wu
ACS Omega (2022) Vol. 7, Iss. 41, pp. 36762-36775
Open Access | Times Cited: 6
How Does Temperature Affect the Dynamics of SARS-CoV-2 M Proteins? Insights from Molecular Dynamics Simulations
Soumya Lipsa Rath, Madhusmita Tripathy, Nabanita Mandal
The Journal of Membrane Biology (2022) Vol. 255, Iss. 2-3, pp. 341-356
Open Access | Times Cited: 5
All‐atom simulations of the trimeric spike protein of SARS‐CoV‐2 in aqueous medium: Nature of interactions, conformational stability and free energy diagrams for conformational transition of the protein
Bhavana Panthi, Saheb Dutta, Amalendu Chandra
Journal of Computational Chemistry (2023) Vol. 44, Iss. 17, pp. 1560-1577
Closed Access | Times Cited: 2
Development of multiscale ultra-coarse-grained models for the SARS-CoV-2 virion from cryo-electron microscopy data
Fengyu Li, Yuwei Zhang, Fei Xia, et al.
Physical Chemistry Chemical Physics (2023) Vol. 25, Iss. 18, pp. 12882-12890
Closed Access | Times Cited: 2
Important parameters derived from Monte Carlo (MC) and Molecular Dynamics (MD) simulations
Priyanka Singh, Younus Raza Beg, Shippi Dewangan, et al.
Elsevier eBooks (2023), pp. 291-317
Closed Access | Times Cited: 2
pH-Based Molecular Dynamics Simulation for Analysing Protein Structure and Folding
Santanu Sasidharan, Rohit Shukla, Timir Tripathi, et al.
(2023), pp. 203-219
Closed Access | Times Cited: 2
Delineating the Structure–Dynamics–Binding Differences among BA.1, BA.4/5, and BF.7 SARS-CoV-2 Variants through Atomistic Simulations: Correlation with Structural and Epidemiological Features
Aryaman Joshi, Shweata Maurya, Atharva Mahale, et al.
ACS Omega (2023) Vol. 8, Iss. 41, pp. 37852-37863
Open Access | Times Cited: 2
Discovery of Potential Natural STAT3 Inhibitors: An in silico Molecular Docking and Molecular Dynamics Study
Sameena Gul, Shabbir Muhammad, Muhammad Irfan, et al.
Journal of Computational Biophysics and Chemistry (2023) Vol. 23, Iss. 02, pp. 189-205
Closed Access | Times Cited: 2
Intelligent Resolution: Integrating Cryo-EM with AI-driven Multi-resolution Simulations to Observe the SARS-CoV-2 Replication-Transcription Machinery in Action
Anda Trifan, Defne Gorgun, Zongyi Li, et al.
bioRxiv (Cold Spring Harbor Laboratory) (2021)
Open Access | Times Cited: 6
Integrated computational approach towards repurposing of antimalarial drug against SARS-CoV-2 main protease
Neelutpal Gogoi, Purvita Chowdhury, Ashis Kumar Goswami, et al.
Structural Chemistry (2022) Vol. 33, Iss. 5, pp. 1409-1422
Open Access | Times Cited: 4
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action
Anda Trifan, Defne Gorgun, Michael Salim, et al.
The International Journal of High Performance Computing Applications (2022) Vol. 36, Iss. 5-6, pp. 603-623
Open Access | Times Cited: 4
Molecular dynamics simulation study on the binding mechanism between carbon nanotubes and RNA-dependent RNA polymerase
Zhaopeng Ma, Jianqiang Xu, Chenchen Wang, et al.
Journal of Biomolecular Structure and Dynamics (2024), pp. 1-10
Closed Access
Sites and Zones of Maximum Reactivity of the most Stable Structure of the Receptor-binding Domain of Wild-type SARS-CoV-2 Spike Protein: A Quantum Density Functional Theory Study
López-Chávez Ernesto, G. Bonomi Alberto, Peña-Castañeda Yesica Antonia, et al.
Journal of Clinical Intensive Care and Medicine (2024) Vol. 9, Iss. 1, pp. 008-016
Open Access
Exploring antiviral properties of Favipiravir analogues; A computational approach
Thejus Varghese Thomas, Anil K. Pillai, Amrita Thakur
AIP conference proceedings (2024) Vol. 3171, pp. 030002-030002
Closed Access
Mechanistic Insights into the Mutational Landscape of the Main Protease/3CLPro and Its Impact on Long-Term COVID-19/SARS-CoV-2 Management
Aganze Gloire-Aimé Mushebenge, Samuel Chima Ugbaja, Nonjabulo Ntombikhona Magwaza, et al.
Future Pharmacology (2024) Vol. 4, Iss. 4, pp. 825-852
Open Access
Molecular interactions and inhibition of the SARS‐CoV‐2 main protease by a thiadiazolidinone derivative
Jacob Andrzejczyk, Katarina Jović, Logan M. Brown, et al.
Proteins Structure Function and Bioinformatics (2022) Vol. 90, Iss. 11, pp. 1896-1907
Open Access | Times Cited: 3
Identification of Potential Anti‐COVID‐19 Drug Leads from Medicinal Plants through Virtual High‐Throughput Screening
Rohoullah Firouzi, Mitra Ashouri
ChemistrySelect (2023) Vol. 8, Iss. 7
Closed Access | Times Cited: 1

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