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OpenAlex Citation Counts

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OpenAlex is a bibliographic catalogue of scientific papers, authors and institutions accessible in open access mode, named after the Library of Alexandria. It's citation coverage is excellent and I hope you will find utility in this listing of citing articles!

If you click the article title, you'll navigate to the article, as listed in CrossRef. If you click the Open Access links, you'll navigate to the "best Open Access location". Clicking the citation count will open this listing for that article. Lastly at the bottom of the page, you'll find basic pagination options.

Requested Article:

Ligand Gaussian Accelerated Molecular Dynamics (LiGaMD): Characterization of Ligand Binding Thermodynamics and Kinetics
Yinglong Miao, Apurba Bhattarai, Jinan Wang
Journal of Chemical Theory and Computation (2020) Vol. 16, Iss. 9, pp. 5526-5547
Open Access | Times Cited: 145

Showing 26-50 of 145 citing articles:

OneOPES, a Combined Enhanced Sampling Method to Rule Them All
Valerio Rizzi, Simone Aureli, Narjes Ansari, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 17, pp. 5731-5742
Open Access | Times Cited: 18
DeepWEST: Deep Learning of Kinetic Models with the Weighted Ensemble Simulation Toolkit for Enhanced Sampling
Anupam Anand Ojha, Saumya Thakur, Surl-Hee Ahn, et al.
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 4, pp. 1342-1359
Open Access | Times Cited: 17
The rotamer of the second-sphere histidine in AA9 lytic polysaccharide monooxygenase is pH dependent
Ingvild Isaksen, Suvamay Jana, Christina M. Payne, et al.
Biophysical Journal (2024) Vol. 123, Iss. 9, pp. 1139-1151
Open Access | Times Cited: 7
Pathways and mechanism of MRTX1133 binding to KRAS G12D elucidated by molecular dynamics simulations and Markov state models
Gao Tu, Yaguo Gong, Xiaojun Yao, et al.
International Journal of Biological Macromolecules (2024) Vol. 274, pp. 133374-133374
Closed Access | Times Cited: 7
Dynamical Reweighting for Biased Rare Event Simulations
Bettina G. Keller, Peter G. Bolhuis
Annual Review of Physical Chemistry (2024) Vol. 75, Iss. 1, pp. 137-162
Closed Access | Times Cited: 7
Structural Models of Human Norepinephrine Transporter Ensemble Reveal the Allosteric Sites and Ligand-Binding Mechanism
Ding Luo, Yang Zhang, Yinghong Li, et al.
The Journal of Physical Chemistry B (2024) Vol. 128, Iss. 36, pp. 8651-8661
Closed Access | Times Cited: 7
Enhanced sampling without borders: on global biasing functions and how to reweight them
Anna S. Kamenik, Stephanie M. Linker, Sereina Riniker
Physical Chemistry Chemical Physics (2021) Vol. 24, Iss. 3, pp. 1225-1236
Open Access | Times Cited: 38
PathDetect-SOM: A Neural Network Approach for the Identification of Pathways in Ligand Binding Simulations
Stefano Motta, Lara Callea, Laura Bonati, et al.
Journal of Chemical Theory and Computation (2022) Vol. 18, Iss. 3, pp. 1957-1968
Open Access | Times Cited: 26
Elucidation of a dynamic interplay between a beta-2 adrenergic receptor, its agonist, and stimulatory G protein
Yanxiao Han, John R.D. Dawson, Kevin R. DeMarco, et al.
Proceedings of the National Academy of Sciences (2023) Vol. 120, Iss. 10
Open Access | Times Cited: 16
Perspectives on Ligand/Protein Binding Kinetics Simulations: Force Fields, Machine Learning, Sampling, and User-Friendliness
Paolo Conflitti, Stefano Raniolo, Vittorio Limongelli
Journal of Chemical Theory and Computation (2023) Vol. 19, Iss. 18, pp. 6047-6061
Open Access | Times Cited: 15
Enhanced sampling in molecular dynamics simulations and their latest applications—A review
Wen‐Hui Shen, Tong Zhou, Xinghua Shi
Nano Research (2023) Vol. 16, Iss. 12, pp. 13474-13497
Closed Access | Times Cited: 14
Multiscale Study on the Intramolecular C–S Bond Formation Catalyzed by P450 Monooxygenase CxnD Involved in the Biosynthesis of Chuangxinmycin: The Critical Roles of Noncrystal Water Molecule and Conformational Change
Xinyi Li, Yongjun Liu
Inorganic Chemistry (2024) Vol. 63, Iss. 9, pp. 4086-4098
Closed Access | Times Cited: 5
Insights into the Interaction Mechanisms of Peptide and Non-Peptide Inhibitors with MDM2 Using Gaussian-Accelerated Molecular Dynamics Simulations and Deep Learning
Wanchun Yang, Jian Wang, Lu Zhao, et al.
Molecules (2024) Vol. 29, Iss. 14, pp. 3377-3377
Open Access | Times Cited: 5
Advanced Sampling Methods for Multiscale Simulation of Disordered Proteins and Dynamic Interactions
Xiping Gong, Yumeng Zhang, Jianhan Chen
Biomolecules (2021) Vol. 11, Iss. 10, pp. 1416-1416
Open Access | Times Cited: 28
Druggable Lipid Binding Sites in Pentameric Ligand-Gated Ion Channels and Transient Receptor Potential Channels
Wayland W.L. Cheng, Mark J. Arcario, John T. Petroff
Frontiers in Physiology (2022) Vol. 12
Open Access | Times Cited: 19
Metadynamics simulations for the investigation of drug loading on functionalized inorganic nanoparticles
Stefano Motta, Paulo Siani, Edoardo Donadoni, et al.
Nanoscale (2023) Vol. 15, Iss. 17, pp. 7909-7919
Open Access | Times Cited: 12
Uncovering the Kinetic Characteristics and Degradation Preference of PROTAC Systems with Advanced Theoretical Analyses
Rongfan Tang, Zhe Wang, Sutong Xiang, et al.
JACS Au (2023) Vol. 3, Iss. 6, pp. 1775-1789
Open Access | Times Cited: 11
Accelerated Molecular Dynamics and AlphaFold Uncover a Missing Conformational State of Transporter Protein OxlT
Jun Ohnuki, Titouan Jaunet‐Lahary, Atsuko Yamashita, et al.
The Journal of Physical Chemistry Letters (2024) Vol. 15, Iss. 3, pp. 725-732
Open Access | Times Cited: 4
Ligand Gaussian Accelerated Molecular Dynamics 3 (LiGaMD3): Improved Calculations of Binding Thermodynamics and Kinetics of Both Small Molecules and Flexible Peptides
Jinan Wang, Yinglong Miao
Journal of Chemical Theory and Computation (2024) Vol. 20, Iss. 14, pp. 5829-5841
Open Access | Times Cited: 4
Caffeine as a stabilizer in Novel Hydroxypropyl-β-cyclodextrin/Axitinib Drug-Delivery Systems: A computational study
Yeng‐Tseng Wang, Tun‐Chieh Chen
Computational and Theoretical Chemistry (2025), pp. 115091-115091
Closed Access
Investigating the Correlation between Product Release and Solvation in Cytochrome P450 Enzymes
Matthew N. Podgorski, Laura Martínez-Castro, John B. Bruning, et al.
ACS Catalysis (2025), pp. 2867-2884
Closed Access
Effect of hexyloxy position on antagonistic properties of KH-5 (1-{2-[4-(hexyloxy)benzoyloxy]ethyl}-1-methyl-1,2,3,6-tetrahydropyridin-1-ium iodide) at muscarinic acetylcholine receptors
Alena Randáková, Eva Mezeiová, Jana Bláhová, et al.
Biomedicine & Pharmacotherapy (2025) Vol. 185, pp. 117977-117977
Closed Access
Dissecting Large-Scale Structural Transitions in Membrane Transporters Using Advanced Simulation Technologies
Shashank Pant, Sepehr Dehghani‐Ghahnaviyeh, Noah Trebesch, et al.
The Journal of Physical Chemistry B (2025)
Closed Access
Cryo-EM as a tool for illuminating activation mechanisms of human class A orphan GPCRs
Isabella C. Russell, Dongju Lee, Denise Wootten, et al.
Pharmacological Reviews (2025), pp. 100056-100056
Open Access
Binding Analysis Using Accelerated Molecular Dynamics Simulations and Future Perspectives
Shristi Pawnikar, Apurba Bhattarai, Jinan Wang, et al.
Advances and Applications in Bioinformatics and Chemistry (2022) Vol. Volume 15, pp. 1-19
Open Access | Times Cited: 17

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